De-novo assembly questions

i like this post (click again to cancel)
0
i dont like this post (click again to cancel) remove favorite mark from this question (click again to restore mark)

Hello,

I am a new user and am trying to use perform an assembly on my paired read Illumina data using Velvet. I have a few questions. First, I am not able to select the sequences I want to assemble. I have uploaded them, put them in my project, and specified the sequence types. However, when I get to the assembly options the select sequences button is not operational. Second, how to I specify paired reads? Last, can I assemble more than one set of paired reads?

Cheers, Ron

asked Sep 06 '11

this post is marked as community wiki

This post is a wiki. Anyone with karma >750 is welcome to improve it.

updated Sep 06 '11

Ron gravatar image Ron
1

Be the first one to answer this question!

Please start posting your answer anonymously - your answer will be saved within the current session and published after you log in or create a new account. Please try to give a substantial answer, for discussions, please use comments and please do remember to vote (after you log in)!
[hide preview]

Tags:

Asked: Sep 06 '11

Seen: 22 times

Last updated: Sep 06 '11

powered by ASKBOT version 0.6.73
Copyright ASKBOT, 2010. Some rights reserved under creative commons license.